PK.

Software · Desktop app

Recode Detector

Tests whether a proteomics run supports an alternative genetic code. It compares searches against a standard and an alternative protein database, shows which version of each protein the peptides support at every changed position, goes back to the raw Thermo or mzML data to check the actual fragmentation spectra against shuffled decoys, reports coverage and quality checks, saves every run, and writes a plain-English PDF report.

Final report example ↗Ask to try it ↗
Recode Detector screenshot of simulated example data showing the raw-spectrum check: annotated fragment spectra and chromatograms for a peptide and its counterpart with the other residue
A simulated example (invented proteins and spectra): the raw-spectrum check compares a peptide with its counterpart carrying the other residue.

What it does

Where it runs

A desktop app. Your data stay on your computer. It reads DIA-NN peptide tables, protein FASTA files, and Thermo .raw or mzML files in place.

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